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️Tools And Methods
also see “awesome-neuroimaging”
This (:tools) namespace includes what would be in the methods section of a paper. The companion :brain namespace includes what would be in the results section. see :brain vs :tools
Magnetic Resonance Imaging (MRI)
- Time-averaged T2* - nT2* of BOLD EPI (fMRI), an lncdtool
- fsl (FSL@Oxford) - tools for FMRI, MRI and diffusion brain imaging data
- freesurfer (FS@MGH) - information about running freesurfer for structural MRI data processing, segmentation, and surface generation
- MoTrak - Loeffler Simulator Motion Tracking - motion awareness in MR simulation (proprietary sofware)
- Surface-based Analysis (cifti) - information about working with cortical surface files in R and with connectome workbench
- BIDS apps - a list of useful software packages that work on BIDS-formatted data (BIDS apps)
Magnetic Resonance Spectroscopy Imaging (MRSI)
Electroencephalogram (EEG)
Behavioral Tasks
Statistical Methods
Approaches to Increasing Sample Diversity during Image Acquisition/Analysis
- Mitigating head motion: behavioral interventions (e.g., movie watching),
Surveys and Assessments
Coding Languages and software tools
Github
General
Wiki
Missing Pages
Linked from somewhere but the page doesn't exist yet (“orphans wanted”).