️Tools And Methods

also see “awesome-neuroimaging”

This (:tools) namespace includes what would be in the methods second of a paper. The companion :brain namespace includes what would be in the results section. see :brain vs :tools

• Time-averaged T2* - nT2* of BOLD EPI (fMRI), an lncdtool
• Neuromelanin
• AFNI (AFNI@NIMH) - suite of C, Python, R, & shell for the analysis and display of anatomical, functional and diffusion weighted data
• fsl (FSL@Oxford) - tools for FMRI, MRI and diffusion brain imaging data
• freesurfer (FS@MGH) - information about running freesurfer for structural MRI data processing, segmentation, and surface generation
• Resting State MRI

• MoTrak - Loeffler Simulator Motion Tracking - motion awareness in MR simulation (proprietary sofware)
• Surface-based Analysis (cifti) - information about working with cortical surface files in R and with connectome workbench
• BIDS apps - a list of useful software packages that work on BIDS-formatted data (BIDS apps)

• MRSI Acquisition
• MRSI in HC @ 7T
• LC Model
• PFC ROI Placement

• EEG at Loeffler
• EEG Preprocessing Pipeline for 7T/BrainMechR01
• Spectral Event Pipeline
• Fitting Oscillations and 1/f (FOOOF)
• Signal to Noise Ratio (SNR)
• EEG Coordinates

• Memory Guided Saccade (MGS) Task
• Antisaccade Tasks
• Reward Learning and Habituation Task
• Auditory Steady State
• DAW Sequential Learning

• Models that disaggregate between and within person effects

• R (used by R Studio)
• Shell
• matlab
• Python
• julia

• BFG: git Repo Cleaner
• Wiki (tool)

• MoTrak - Loeffler Simulator Motion Tracking
• LNCD Tools
• LNCD Software
• LNCD Database
• Eye Tracking
• make
• NIC
• NeuroBS Presentation
• Shell
• R:tidyverse/dplyr
• Tutorials
• Magic Wormhole
• LNCD Bot

• Wiki Map Description
• Wiki Tricks
• Project Template

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