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grants:7t:data [2023/11/13 12:51] – sdm63grants:7t:data [2025/05/16 16:37] (current) – [7T Data: merge_7t.csv] will
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 </code> </code>
  
 +
 +Using [[::tools:r]]  on [[::admin:it:rhea]], or anywhere with ''/Volumes/Hera''mounted, load like:
 +
 +<code=R>
 +merge7t <- read.csv('/Volumes/Hera/Projects/7TBrainMech/scripts/txt/merged_7t.csv')
 +</code>
 +
 +
 +The pet study analog to this file is [[:grants:pet:data]]
 ===== Definition and Glossary ===== ===== Definition and Glossary =====
 [[https://pitt-my.sharepoint.com/:x:/g/personal/foran_pitt_edu/Ec9BGy0o61RBn96VEwPZZWgBpJAR9-i5fJnx4_nDRYxxTA?e=0XR9uj|data dictionary spreadsheet]] [[https://pitt-my.sharepoint.com/:x:/g/personal/foran_pitt_edu/Ec9BGy0o61RBn96VEwPZZWgBpJAR9-i5fJnx4_nDRYxxTA?e=0XR9uj|data dictionary spreadsheet]]
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   * [[:tools:pfc]] (MRSI) [[:tools:lcmodel]]: gm, gmrat, gamadj; [[:brain:glu]], [[:brain:gaba]]   * [[:tools:pfc]] (MRSI) [[:tools:lcmodel]]: gm, gmrat, gamadj; [[:brain:glu]], [[:brain:gaba]]
   * resting state MRSI ROIS dfa, husrt (cf. [[:tools:fooof]]) preprocessing ''_brns'' vs ''_ns''   * resting state MRSI ROIS dfa, husrt (cf. [[:tools:fooof]]) preprocessing ''_brns'' vs ''_ns''
-  * [[:brain:asrysr]] +  * [[tools:asrysr]] 
   * AntiET camera eye tracking at behavioral visit for anti (look away from dot) eprime task (cf. electords for EEG mgs)    * AntiET camera eye tracking at behavioral visit for anti (look away from dot) eprime task (cf. electords for EEG mgs) 
   * cantab behavioral visit suit of touch screen "games". does not exist for later timepoints   * cantab behavioral visit suit of touch screen "games". does not exist for later timepoints
   * ADI Area Deprivation Index: rankings of neighborhoods by socioeconomic disadvantage   * ADI Area Deprivation Index: rankings of neighborhoods by socioeconomic disadvantage
   * EEG:    * EEG: 
-    * All regional measures are pre outlier approved on the trial level which are then averaged together per channel, the channels for the requested regions are then averaged together for left and right, and then an additional outlier detection is done on the subject level+    * The channels for the requested regions are averaged together for left and right, and then an outlier detection is done on the subject level
     * The regional measures are created in ''/Volumes/Hera/Projects/7TBrainMech/scripts/eeg/Shane/Rscripts/SNR/createRegionalMeasures.R'' and the resulting data frames will be found in the root directory ''/Volumes/Hera/Projects/7TBrainMech/scripts/eeg/Shane/Results''     * The regional measures are created in ''/Volumes/Hera/Projects/7TBrainMech/scripts/eeg/Shane/Rscripts/SNR/createRegionalMeasures.R'' and the resulting data frames will be found in the root directory ''/Volumes/Hera/Projects/7TBrainMech/scripts/eeg/Shane/Results''
     * DLPFC FOOOF measures exponent and offset      * DLPFC FOOOF measures exponent and offset 
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       * This data is in ''SNR/allSubjectDLPFC_SNRMeasures_20231113.csv''       * This data is in ''SNR/allSubjectDLPFC_SNRMeasures_20231113.csv''
  
 +
 +also see [[:admin:spreadsheets#packets]]
 ==== Excluded Data ==== ==== Excluded Data ====
  
 EEG per channel measures are stored in longer format (row per visit+channel) in [[grants:7t:merge7teeg]] EEG per channel measures are stored in longer format (row per visit+channel) in [[grants:7t:merge7teeg]]