7T Data: merge_7t.csv
/Volumes/Hera/Projects/7TBrainMech/scripts/Makefile
tracks analysis that generate measures for each visit/session. These are combined into a wide-format dataframe using GNU R. The resulting comma separated value file is
/Volumes/Hera/Projects/7TBrainMech/scripts/txt/merged_7t.csv
Using GNU R on Rhea (linux server), or anywhere with /Volumes/Hera
mounted, load like:
merge7t <- read.csv('/Volumes/Hera/Projects/7TBrainMech/scripts/txt/merged_7t.csv')
Definition and Glossary
Included Data
- resting state MRSI ROIS dfa, husrt (cf. Fitting Oscillations and 1/f (FOOOF)) preprocessing
_brns
vs_ns
- AntiET camera eye tracking at behavioral visit for anti (look away from dot) eprime task (cf. electords for EEG mgs)
- cantab behavioral visit suit of touch screen “games”. does not exist for later timepoints
- ADI Area Deprivation Index: rankings of neighborhoods by socioeconomic disadvantage
- EEG:
- The channels for the requested regions are averaged together for left and right, and then an outlier detection is done on the subject level
- The regional measures are created in
/Volumes/Hera/Projects/7TBrainMech/scripts/eeg/Shane/Rscripts/SNR/createRegionalMeasures.R
and the resulting data frames will be found in the root directory/Volumes/Hera/Projects/7TBrainMech/scripts/eeg/Shane/Results
- DLPFC FOOOF measures exponent and offset
- This data is in
FOOOF/allSubjectDLPFCfooofMeasures_20231113.csv
- DLPFC SNR measures
- This data is in
SNR/allSubjectDLPFC_SNRMeasures_20231113.csv
Excluded Data
EEG per channel measures are stored in longer format (row per visit+channel) in Merge 7T EEG