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tools:psc [2023/12/12 11:45] – [Pittsburgh Super Computer] will | tools:psc [2024/04/26 10:31] (current) – [Getting an account] will | ||
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====== Pittsburgh Super Computer ====== | ====== Pittsburgh Super Computer ====== | ||
- | | + | **General information** |
- | | + | |
- | * quick test for interactive queue: '' | + | For planned outages see: https:// |
+ | |||
+ | To log in to the supercomputer | ||
+ | , [[: | ||
+ | |||
+ | |||
+ | To test what resources you have access to type '' | ||
+ | Quick test for interactive queue: '' | ||
+ | |||
+ | ===== Getting an account ===== | ||
+ | - https:// | ||
+ | - you [[https:// | ||
+ | - send user account to PI (Finn or Bea) for approval in the project/ | ||
+ | - request matlab access from https:// | ||
+ | |||
+ | ===== Getting data to and from the PSC ===== | ||
+ | |||
+ | |||
+ | You can copy files to/from rhea-PSC via rsync, for example '' | ||
+ | |||
+ | Alternatively, | ||
+ | |||
+ | ===== Submitting jobs on the PSC ===== | ||
+ | |||
+ | |||
+ | Jobs are submitted on the PSC via '' | ||
+ | |||
+ | **If you need to run a script that requires command line arguments**, | ||
+ | |||
+ | < | ||
+ | # in your script to be run by the job queue | ||
+ | export bids_dir freesurfer_dir freesurfer_sif license acq_label | ||
+ | do_thing $bids_dir | ||
+ | |||
+ | #in your sbatch call | ||
+ | --export=" | ||
+ | </ | ||
+ | |||
+ | Not sure what resources to request? You can run 1 job with more resources than you think you will need. When the job completes successfully, | ||
+ | |||
+ | ===== Checking the status and resource usage of your submitted jobs ===== | ||
+ | |||
+ | When you have launched some jobs, you can check on whether they are running via '' | ||
+ | |||
+ | To find the jobid of jobs that you previously ran (that are either running, completed successfully, | ||
+ | |||
* allocation hour calculator: TODO | * allocation hour calculator: TODO | ||