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LNCD
Docs » ️Tools And Methods

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️Tools And Methods

Software and services useful for neuroimaging

Magnetic Resonance Imaging (MRI)


Function Magnetic Resonance Imaging (fMRI)


Magnetic Resonance Spectroscopy Imaging (MRSI)


Electroencephalogram (EEG)

  • Rejecting EEG


Behavioral Tasks


General

  • Antisaccade Tasks
  • eeg
  • EEG at Loeffler
  • Eye Tracking
  • GNU R
  • lncd
  • mmy4
  • PFC ROI Placement
  • Python
  • RAID
  • REDCap
  • Reward Learning and Habituation Task
  • Switch Task (MMY4, SPA)
  • Wiki (tool)
  • **Geocoding! **
  • A Practical Guide to Choosing the Value of k for Age Smooths in Generalized Additive (Mixed) Models
  • ADM
  • Adolescent Sleep Wake Scale
  • AFNI
  • AFNI GUI
  • ANTs
  • Area Deprivation Index (ADI)
  • ASR/YSR
  • Auditory Steady State Response
  • Automatic Eye Scoring
  • BEA_RES (L Drive)
  • Behavioral Indicator of Resiliency to Distress (BIRD)
  • BFG: git Repo Cleaner
  • BIDS
  • bids_apps
  • Brain Templates
  • Cambridge Neuropsychological Test Automated Battery (CANTAB)
  • Clock Task
  • Code Review
  • convert3d
  • CRC
  • Creating a Reproducibility Guide using Github Pages
  • CSpine
  • Datalad
  • Daw Sequential Learning “Two-Step” Task
  • Demographics
  • Difficulties in Emotion Regulation Scale
  • Docker
  • Drug Use Questionnaire (DUQ)
  • EEG Coordinates
  • EEG Preprocessing Pipeline for 7T/BrainMechR01
  • EEG Remarking Status Channel
  • Emacs
  • Entropy
  • EPrime
  • Fitting Oscillations and 1/f (FOOOF)
  • fMRI Preprocessing
  • fmriprep
  • freesurfer
  • Frogger Task
  • GAM
  • Git
  • GitHub CLI
  • Github setup
  • Global Connect
  • Globus Connect
  • Gordon + Harvard-Oxford Atlas
  • Gordon Atlas
  • Hair Hormones
  • highresolutionlogos
  • hippunfold
  • Hopkins Verbal Learning Task (HVLT)
  • htop
  • Hurst Exponent
  • Infrastructure Citations
  • Intolerance of uncertainty scale (IUS)
  • Large Language Models
  • LC Model
  • LNCD Bot
  • LNCD Database
  • lncd MNI 2018 (grid size mismatch)
  • LNCD Software
  • LNCD Tools
  • Loef Simulator (Mock Scanner)
  • Magic Wormhole
  • make
  • Memory Guided Saccade (MGS) Task
  • Millisecond Inquisit
  • MobaXterm
  • models_that_disaggregate_between_and_within_person_effects
  • MoTrak - Loeffler Simulator Motion Tracking
  • MP2RAGE
  • MR Motion
  • MRSI in HC @ 7T (scripts)
  • MRSI ROI Coordinate placement tool
  • MRSI Slice Positioning tool (QPASA)
  • MT
  • NeuroBS Presentation
  • Neuromelanin
  • NIC
  • nnUNet
  • Nonfactional Matlab Toolbox (for hurst exponent)
  • Note Taking Tools
  • Pittsburgh Super Computer
  • Preprocess Functional (Hallquist pipeline)
  • preprocessMprage (Hallquist pipeline)
  • Project Template
  • Psychopy
  • Psychtoolbox
  • Puberty Measures
  • QC: Quality Checking
  • QSM
  • Qualtrics
  • Questionnaire of Unpredictability in Childhood (QUIC)
  • R:tidyverse/dplyr
  • R2'
  • Resting State Functional MRI
  • Resting State Task
  • Reynolds Intellectual Screening Test (RIST)
  • RT-18
  • Schaefer Atlas
  • Secure Shell
  • sEEG Resting State
  • Shell
  • Signal to Noise Ratio (SNR)
  • Sleep Timing Questionnaire
  • Slips Task
  • slurm
  • Spectral Event Pipeline
  • SPM
  • SPM BIDS App
  • SSH Display Forwarding (X11)
  • Stress & Adversity Inventory
  • Surface-based Analysis (cifti)
  • T1/T2 Ratio
  • TemplateFlow
  • Time-averaged T2*
  • tmux
  • Tutorials
  • UNICORT
  • UPPS-P Impulsivity Scale
  • Usage Profiling and benchmarking
  • uv
  • Vim
  • Visually Guided Saccade Task
  • World Health Organization Quality of Life (WHOQOL-BREF)
  • Zenodo DOI

Missing Pages

Linked from somewhere but the page doesn't exist yet (“orphans wanted”).

# ID Links
1tools:tanner6 : Show backlinks
2tools:matlab5 : Show backlinks
3tools:xcpd5 : Show backlinks
4tools:fsl4 : Show backlinks
5tools:neo-ffi4 : Show backlinks
6tools:peterson4 : Show backlinks
7tools:qsiprep4 : Show backlinks
8tools:eeg3 : Show backlinks
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13tools:hurst2 : Show backlinks
14tools:nih_toolbox2 : Show backlinks
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35tools:frmiprep1 : Show backlinks
36tools:habittask:eeg_measure1 : Show backlinks
37tools:harmonization1 : Show backlinks
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42tools:lncdtask1 : Show backlinks
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57tools:rlhabittask1 : Show backlinks
58tools:seeg1 : Show backlinks
59tools:singularity1 : Show backlinks
60tools:tfce1 : Show backlinks
61tools:tsnr1 : Show backlinks
62tools:wasi1 : Show backlinks
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