Tools

software and services useful for neuroimaging

Antisaccade Tasks
eeg
EEG at Loeffler
Eye Tracking
GNU R
lncd
mmy4
PFC ROI Placement
Python
RAID
REDCap
Reward Learning and Habituation Task
Switch Task (MMY4, SPA)
Wiki (tool)
**Geocoding! **
A Practical Guide to Choosing the Value of k for Age Smooths in Generalized Additive (Mixed) Models
ADM
Adolescent Sleep Wake Scale
AFNI
AFNI GUI
ANTs
Area Deprivation Index (ADI)
ASR/YSR
Auditory Steady State Response
Automatic Eye Scoring
BEA_RES (L Drive)
Behavioral Indicator of Resiliency to Distress (BIRD)
BFG: git Repo Cleaner
BIDS
bids_apps
Brain Templates
Cambridge Neuropsychological Test Automated Battery (CANTAB)
Clock Task
Code Review
convert3d
CRC
Creating a Reproducibility Guide using Github Pages
CSpine
Datalad
Daw Sequential Learning “Two-Step” Task
Demographics
Difficulties in Emotion Regulation Scale
Docker
Drug Use Questionnaire (DUQ)
EEG Coordinates
EEG Preprocessing Pipeline for 7T/BrainMechR01
EEG Remarking Status Channel
Emacs
Entropy
EPrime
Fitting Oscillations and 1/f (FOOOF)
fMRI Preprocessing
fmriprep
freesurfer
Frogger Task
GAM
Git
GitHub CLI
Github setup
Global Connect
Globus Connect
Gordon + Harvard-Oxford Atlas
Gordon Atlas
Hair Hormones
highresolutionlogos
hippunfold
Hopkins Verbal Learning Task (HVLT)
htop
Hurst Exponent
Infrastructure Citations
Intolerance of uncertainty scale (IUS)
Large Language Models
LC Model
LNCD Bot
LNCD Database
lncd MNI 2018 (grid size mismatch)
LNCD Software
LNCD Tools
Loef Simulator (Mock Scanner)
Magic Wormhole
make
Memory Guided Saccade (MGS) Task
Millisecond Inquisit
MobaXterm
models_that_disaggregate_between_and_within_person_effects
MoTrak - Loeffler Simulator Motion Tracking
MP2RAGE
MR Motion
MRSI in HC @ 7T (scripts)
MRSI ROI Coordinate placement tool
MRSI Slice Positioning tool (QPASA)
MT
NeuroBS Presentation
Neuromelanin
NIC
nnUNet
Nonfactional Matlab Toolbox (for hurst exponent)
Note Taking Tools
Pittsburgh Super Computer
Preprocess Functional (Hallquist pipeline)
preprocessMprage (Hallquist pipeline)
Project Template
Psychopy
Psychtoolbox
Puberty Measures
QC: Quality Checking
QSM
Qualtrics
Questionnaire of Unpredictability in Childhood (QUIC)
R:tidyverse/dplyr
R2'
Resting State Functional MRI
Resting State Task
Reynolds Intellectual Screening Test (RIST)
RT-18
Schaefer Atlas
Secure Shell
sEEG Resting State
Shell
Signal to Noise Ratio (SNR)
Sleep Timing Questionnaire
Slips Task
slurm
Spectral Event Pipeline
SPM
SPM BIDS App
SSH Display Forwarding (X11)
Stress & Adversity Inventory
Surface-based Analysis (cifti)
T1/T2 Ratio
TemplateFlow
Time-averaged T2*
tmux
Tutorials
UNICORT
UPPS-P Impulsivity Scale
Usage Profiling and benchmarking
uv
Vim
Visually Guided Saccade Task
World Health Organization Quality of Life (WHOQOL-BREF)
Zenodo DOI

Previous Next