TemplateFlow

https://www.templateflow.org/ is a repository of neuroimaging templates (eg. MNI) and a python library to pragmatically download them. You can find these on rhea:/opt/ni_tools/templateflow/

  • on Rhea (linux server) the environment variable TEMPLATEFLOW_HOME is set to /opt/ni_tools/templateflow/ – a shared location for all templates.
    • ~/.cache/templateflow can be a symbolic link to /opt/ni_tools/templateflow/
  • when using Docker or singularity, consider bind mounting your $TEMPLATEFLOW_HOME to that used in the container -v /opt/ni_tools/templateflow/:/root/.cache/templateflow. This will avoid downloading large files every time the container is run

Templates

 ls /opt/ni_tools/templateflow
tpl-dhcpAsym             tpl-MNI152NLin2009bSym   tpl-NKI
tpl-dhcpSym              tpl-MNI152NLin2009cAsym  tpl-NMT31Sym
tpl-dhcpVol              tpl-MNI152NLin2009cSym   tpl-OASIS30ANTs
tpl-Fischer344           tpl-MNI152NLin6Asym      tpl-onavg
tpl-fsaverage            tpl-MNI152NLin6Sym       tpl-PNC
tpl-fsLR                 tpl-MNI305               tpl-RESILIENT
tpl-MNI152Lin            tpl-MNIColin27           tpl-UNCInfant
tpl-MNI152NLin2009aAsym  tpl-MNIInfant            tpl-VALiDATe29
tpl-MNI152NLin2009aSym   tpl-MNIPediatricAsym     tpl-WHS
tpl-MNI152NLin2009bAsym  tpl-MouseIn