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LNCD Software
Homegrown
R, generic, and shell tools made specifically for our research
External
Here's a list of external software used for research. This is ideal reference for OAC Administered Systems. Also see awesome-neuroimaging list
| package | why |
|---|---|
| Adobe Illustrator, Acrobat | figure editing |
| Matlab (Fieldtrip, SPM, PsychToolbox) | MR and EEG analysis, behavioral task edit/inspect |
| R + Rstudio | statistical analysis |
| AFNI | MR analysis and visualization |
| DSIstudio | MR (DSI) analysis and visualization |
| Connectome Workbench | MR (surface) analysis and visualization |
| MS Office | manuscript authoring |
| Zotero + Word extension | manuscript authoring |
| Chrome + Zotero extension | manuscript authoring |
| python | statistical analysis |
| Git tools | software programming |
| Horos (dicom viewer) | MR (raw) visualization |
| Slack desktop | Pitt collaboration and communication |
| Zoom | Collaboration and communication |
Dependencies
| package | why |
|---|---|
| xcode | afni depends(homebrew) and R libaries (compiling) |
| homebrew: python, gfortran, libxml, netpbm, openblas, lapack | AFNI, R library compiling |
| Xquartz | AFNI and ssh X11-forwarding |