Resting State Functional MRI
Data
See Resting State Task for rest “task” descriptions (projector off, eyes open)
Then sorted by BIDS
Pre-processing
Preprocessing addresses MR Motion (registration), slice timing, fieldmap unwarping (susceptibility correction) skull stripping (brain extraction) for warping (spatial normalization).
A common solution is fmriprep on top of BIDS.
For Habit (as of 2/10/25):
/Volumes/Hera/Projects/Habit/mr/fmriprep_habitstudy.bash nipreps/fmriprep:22.0.0
see fmriprep website to determine specific settings for script and multi-echo processing- https://fmriprep.org/en/stable/workflows.html#:~:text=if%20multi-echo%20bold%20data%20is%20supplied%2C%20this%20workflow%20uses
Post-processing
Analysis
- Resting state functional connectivity
- T1w/T2w intracortical myelination