Cog Grant

Scanned with 3T on southside (BIRC → NIC) before it was shut down (c. 2019).

Tasks

MR

Functional MRI tasks include 4 runs of Antisaccade Tasks block design (breaks maybe background Resting State Task) and 3 runs of Memory Guided Saccade (MGS) Task. There is also a dwi and structural scan.

for d in /Volumes/Hera/Raw/MRprojects/CogLong/150411090938/*; do 
  find $d -type f -iname '*dcm' -exec\
   dicom_hinfo \
       -sepstr \| -no_name -full_entry \
       -tag 0018,1030 -tag 0018,0080 -tag 0018,1310 {} \; \
       -quit
   done | sed 's/^\|$/|/g'

acq name	TR	Acq Mat
circle_localizer	20	0 256 256 0
trufi_sag	5.43	0 256 256 0
t2_tse_tra	4790	0 256 256 0
t1_mprage_sag_ns_tilt	1630	0 256 256 0
ep2d_diff_mddw6	3900	128 0 0 128
ep2d_bold_9VGSANTI	1500	64 0 0 64
ep2d_bold_9VGSANTI	1500	64 0 0 64
ep2d_bold_9VGSANTI	1500	64 0 0 64
ep2d_bold_9VGSANTI	1500	64 0 0 64
ep2d_bold_MGS	1500	64 0 0 64
ep2d_bold_MGS	1500	64 0 0 64
ep2d_bold_MGS	1500	64 0 0 64
t1_mprage_sag_ns_tilt	1630	0 256 256 0

Behavioral

Tasks recorded in the original MS Access Database (exported to postgresql). We have responses for wasi (IQ), Puberty Measures (tanner), and stroop among others.

lncddb "
  select task,
         count(*) cnt,
         to_char(min(vtimestamp),'YYYY-MM-DD') first,
         to_char(max(vtimestamp),'YYYY-MM-DD') last
  from visit_task natural
  join visit_study natural join visit
  where study like 'Cog%'
  group by task
  having count(*) > 10
  order by cnt desc;" | sed 's/^\|$\|\t/|/g'

task	cnt	first	last
Demographics	880	2000-01-01	2019-05-11
PaperStroop	845	2004-01-19	2019-05-11
PrePostBehavioral	837	2005-05-12	2019-05-11
CANTABQuestionnaire	831	2005-05-12	2019-05-11
SensationSeeking	680	2006-01-25	2019-05-11
PrePostScan	624	2005-07-05	2019-06-08
Puberty	581	2005-03-10	2018-01-26
WASI	553	2000-01-01	2018-08-25
Handedness	477	2000-01-01	2018-01-26
CBCL	12	2006-08-24	2010-08-11
EpilepsyQuestionnaire	11	2006-08-24	2008-12-03
BRIEF	11	2006-08-24	2008-12-03
CDI	11	2006-08-24	2008-12-03
SCARED	11	2006-08-24	2008-12-03

Sensation Seeking

select measures::json 
 from visit_task 
 natural join visit_study
 where study like 'Cog%' and
       task like 'SensationSeeking%'
 limit 3;
 
                                   measures                                    
--------------------------------------------------------------------------------
 {"Notes": "", "sssBS": 1, "sssES": 2, "sssDIS": 1, "sssTAS": 6, "sssTOT": 10}
 {"Notes": "", "sssBS": 3, "sssES": 3, "sssDIS": 4, "sssTAS": 4, "sssTOT": 14}
 {"Notes": "", "sssBS": 1, "sssES": 6, "sssDIS": 4, "sssTAS": 10, "sssTOT": 21}

Puberty

select measures::json from visit_task natural join visit_study where study like 'Cog%' and task like 'Puberty%' limit 1;


 {"tsr": 3.5, "Notes": "", "Fpubic": null, "Mpubic": null, "pps1to5": 2.8, "Mgenital": null, "Tanner3m": null, "heightft": 5, "heightin": 2, "pps3skin": 3, "pps6devt": 4, "weightlbs": 90, "FppsMenstr": -1, "Mpps4voice": null, "pps1growth": 2, "Fage.Breast": null, "Fpps4breast": 2, "Tanner1hair": 4, "pubcomplete": 0, "agepubcompMO": null, "pps2bodyhair": 3, "Mpps5hairface": null, "agepubcompYRS": null, "FppsMenstrAgeMO": 10, "FppsMenstrAgeYR": 13, "Fage.Menstration": null, "Tanner2TSP.orBreast": 3}