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Thalamus

MRSI

Interest in Thalamus from Sarpal, via FC:

NAAG is meant to modulate glutamatergic activity, so quetion was whether this predicts thalamic functional connectivity
running a seeded FC analysis on the thalamus and regressing voxelwise values vs NAAG seemed like a relatively easy thing to check

Segmentation

For freesurfer segmentation, see segmentThalamicNuclei.sh.

7T

In 7T Magnetic Resonance Imaging, /Volumes/Hera/Projects/7TBrainMech/scripts/mri/FS/020_segThal.bash has

# run thalmus segmentation with FS7.2
# 20230313 ... for OR

STATS=thalamic-nuclei.rh.v12.T1.stats
SCRIPT=segmentThalamicNuclei.sh

As of 2025-09-09, 275 have ThalamicNuclei.v12.T1.mgz segmentation output files.

ls  /Volumes/Hera/preproc/7TBrainMech_rest/FS7.2/highres/1*_2*/mri/ThalamicNuclei.v12.T1.mgz|wc -l
275