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tools:rsfmri [2025/02/10 15:22] – [Pre-processing] vid79tools:rsfmri [2025/07/21 11:49] (current) – [Pre-processing] will
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 ===== Pre-processing ===== ===== Pre-processing =====
  
-//Once put in BIDS// In fmriprep:+Preprocessing addresses [[:tools:mr_motion]] (registration), slice timing, fieldmap unwarping (susceptibility correction) skull stripping (brain extraction) for warping (spatial normalization). 
  
-motion correction, fieldmap correction, brain extraction (BET)+A common solution is [[:tools:fmriprep]] on top of [[:tools:BIDS]].
  
-For Habit:+ 
 +For Habit (as of 2/10/25):
  
       /Volumes/Hera/Projects/Habit/mr/fmriprep_habitstudy.bash      nipreps/fmriprep:22.0.0       /Volumes/Hera/Projects/Habit/mr/fmriprep_habitstudy.bash      nipreps/fmriprep:22.0.0
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 ===== Analysis ===== ===== Analysis =====
 +  * Resting state functional connectivity
 +  * T1w/T2w intracortical myelination