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tools:rsfmri [2025/02/10 15:17] – [Post-processing] vid79tools:rsfmri [2025/07/21 11:49] (current) – [Pre-processing] will
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 See [[:tools:rest]] for rest "task" descriptions (projector off, eyes open) See [[:tools:rest]] for rest "task" descriptions (projector off, eyes open)
  
 +Then sorted by BIDS
 ===== Pre-processing ===== ===== Pre-processing =====
  
-//Once put in BIDS// In fmriprep:+Preprocessing addresses [[:tools:mr_motion]] (registration), slice timing, fieldmap unwarping (susceptibility correction) skull stripping (brain extraction) for warping (spatial normalization). 
  
-nuisance regression, connectivity analysis, BET+A common solution is [[:tools:fmriprep]] on top of [[:tools:BIDS]].
  
-For Habit:+ 
 +For Habit (as of 2/10/25):
  
       /Volumes/Hera/Projects/Habit/mr/fmriprep_habitstudy.bash      nipreps/fmriprep:22.0.0       /Volumes/Hera/Projects/Habit/mr/fmriprep_habitstudy.bash      nipreps/fmriprep:22.0.0
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 ===== Post-processing ===== ===== Post-processing =====
  
 +XCP-D
 +https://xcp-d.readthedocs.io/en/latest/
  
 ===== Analysis ===== ===== Analysis =====
 +  * Resting state functional connectivity
 +  * T1w/T2w intracortical myelination