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tools:r [2025/08/11 21:50] – [Old Versions] willtools:r [2026/07/24 12:43] (current) – [GNU R] will
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-The [[https://www.r-project.org/|GNU R programming language]] is often paired with [[https://posit.co/download/rstudio-desktop/|posit's RStudio Desktop IDE]] and a suit of libraries (language packages) known as [[:tools:tidyverse|tidyverse]] (includes ''dplyr'' and ''ggplot2''). +The [[https://www.r-project.org/|GNU R programming language]] is often paired with [[https://posit.co/download/rstudio-desktop/|posit's RStudio Desktop IDE]] and a suit of libraries (language packages) known as [[:tools:tidyverse|tidyverse]] (includes ''dplyr'' and ''ggplot2''). R and RStudio (including Rmarkdown code cells) can use python interleaved with R code. See [[:tools:r:python]].
  
 You can also find a web interface to [[http://rhea.wpic.upmc.edu:8787/|Rstudio on rhea]] (also [[:admin:remoteaccess]]). You can also find a web interface to [[http://rhea.wpic.upmc.edu:8787/|Rstudio on rhea]] (also [[:admin:remoteaccess]]).
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   * [[:tools:r:versions]] for using specific older versions    * [[:tools:r:versions]] for using specific older versions 
 ===== Notes ===== ===== Notes =====
 +
 +==== Rstudio Chunk output in console ====
 +To use the panel for images instead of seeing them inlined within ''.Rmd'' use the "Chunk output in console" setting, either from the gear dropdown menu or in the yaml front matter.  (From Dan & Victoria)
 +
 +{{.:pasted:20251121-162226.png}}
 +{{.:pasted:20251121-162127.png}}
 +
 +<code=R>
 +---
 +editor_options:
 +  chunk_output_type: console
 +---
 +</code>
  
 ==== na.action for residual ==== ==== na.action for residual ====