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tools:qc [2024/11/07 18:00] – willtools:qc [2025/09/15 12:33] (current) – [QC: Quality Checking] will
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 Various data have been manually/visually inspected. Various data have been manually/visually inspected.
  
-  * [[:tools:pfc]] - individual MRSI spectrums, annotated on [[https://lncd.pitt.edu/wiki/doku.php?id=tools:qc|google sheets]]+  * [[:tools:pfc]] - tracked using [[https://docs.google.com/spreadsheets/d/1UlOZxnR4NJzJ5rcvbsaRl2JHqBr9gKQDy7RUj-2KKTo/edit?gid=0#gid=0|google sheets]], elsewhere individual MRSI spectrums inspected.
   * [[:grants:7t:mr:qc]] - ''MP2Rage'' alignment (skull stripping)   * [[:grants:7t:mr:qc]] - ''MP2Rage'' alignment (skull stripping)
-  * MT/noMT multi sequence quality and alignment checks ([[:grants:pet|PET Study]])+  * [[:tools:mt|MT/noMT]] multi sequence quality and alignment checks ([[:grants:pet|PET Study]]) 
 +  * [[:tools:neuromelanin]] -  
 +  * [[:tools:hc]] - 
 +  * [[:tools:r2p]] 
 +  * fMRI prep: tracked using https://pitt-my.sharepoint.com/:x:/r/personal/sdm63_pitt_edu/Documents/fMRI_QC.xlsx?d=wab813dc348124a0f9703ef5f5885890e&csf=1&web=1&e=ijyb77 
 +  * [[:grants:habit]] DWI tracked using [[https://pitt-my.sharepoint.com/:x:/g/personal/vid79_pitt_edu/EXrl_ntO9bxAoDoGMgBjWRUBsJvkm87KM6viyzsvfrizYA|microsoft excel]] 
 + 
 +===== Creating a QC protocol ===== 
 +When creating a new document for collecting quality checking records 
 +  * use Pitt credentials on office365's http://excel.office.com/ (google drive blocked by UPMC, UPMC onedrive cannot share links externally) 
 +  * provide a score (eg. 0-3), see [[#Scoring]] below for example rubric 
 +  * allow for optional annotations 
 +  * if possible, collect screenshots, see "[[https://support.microsoft.com/en-us/office/insert-picture-in-cell-in-excel-e9317aee-4294-49a3-875c-9dd95845bab0|picture-in-cell]]" for pasting screenshots on specified row 
 + 
 +==== Scoring ==== 
 +Here's an example rubric  
 +^ score ^ desc ^ 
 +^ 0 | bad data, cannot recover| 
 +^ 1 | processed failed, try rerunning| 
 +^ 2 | looks *okay* but if visit is outlier, check here again | 
 +^ 3 | process worked as expected |