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tools:preprocessmprage [2025/08/04 14:38] – [mp2rage] willtools:preprocessmprage [2025/08/04 14:38] (current) – will
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   * SPM correction via VS's [[projects:mtrsnr#analysis_pipelinestructural_image_processing|Correct UNI for B1+ transmit field biases]]   * SPM correction via VS's [[projects:mtrsnr#analysis_pipelinestructural_image_processing|Correct UNI for B1+ transmit field biases]]
   * try ''-strong_bias -unifize -ss_method ROBEX''   * try ''-strong_bias -unifize -ss_method ROBEX''
 +
 +
 +===== QA/QC =====
 +
 +The pipeline provides ''qa_images'' for quality checking. And can be further inspected using a full nifti viewer like ''afni''.
 +
 +The most likely failure is during skullstripping.
 +
 +{{:tools:pasted:20250804-142647.png?200}}
 +
 +==== Failure example ====
 +
 +{{:tools:pasted:20250804-142657.png?200}}
 +
 +Inspecting further with ''afni'', using ''$'' keypress to toggle the overlay/underlay slider
 +{{:tools:pasted:20250804-142703.png?200}}
  
 ===== Options ===== ===== Options =====
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 </code> </code>
-===== QA/QC ===== 
- 
-The pipeline provides ''qa_images'' for quality checking. And can be further inspected using a full nifti viewer like ''afni''. 
- 
-The most likely failure is during skullstripping. 
- 
-{{:tools:pasted:20250804-142647.png}} 
- 
-==== Failure example ==== 
- 
-{{:tools:pasted:20250804-142657.png}} 
- 
-Inspecting further with ''afni'', using ''$'' keypress to toggle the overlay/underlay slider 
-{{:tools:pasted:20250804-142703.png}}