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tools:loefeeg [2023/09/19 10:08] – removed - external edit (Unknown date) 127.0.0.1tools:loefeeg [2026/09/25 16:27] (current) – will
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 +====== EEG at Loeffler ======
 +
 +The current first-floor Loeffler building EEG collection first started in March-May 2022. And is used for [[:grants:habit:eeg]] (and maybe eventually [[:grants:spa:eeg|SPA EEG]]). [[:grants:7t:eeg]] had some but not all data collected here. Both Habit and 7T data are stored in ''/Volumes/Hera/Raw/EEG/''
 +
 +  * For setup, see [[:tools:loefeeg:setup]]
 +  * [[:tools:loefeeg:bucket]]
 +  * [[:tools:loefeeg:faraday]]
 +  * [[:tools:loefeeg:eegtaskpc]]
 +  * [[:tools:loefeeg:log]] -- dates for/ history of what's gone wrong, what's been replaced
 +
 +===== Battery =====
 +
 +  * ADC-Box Battery should be charged between sessions
 +  * Make sure that the orange (charging) light is always on when plugged in
 +  * Dr. Salisbury's group taught us to leave battery plugged in when not in use (assuming overcharge protection)
 +
 +2024-12-13 - battery loosing charge capacity?
 +
 +{{:tools:pasted:20241213-122717.png?100}}
 +
 +===== Audio =====
 +
 +  * Tasks
 +    * [[tools:habittask]]  ([[grants:habit]]) for reward feedback
 +    * [[tools:auditorysteadystate]]  ([[grants:7t]]) passive listening to click trains
 +  * Hardware: Task PC -> 35mm aux -> RCA Adapter ->  [[https://shop.neurospec.com/er2-tubal-insert-ear-phones|Etymotic Research's ER-2]] -> "foam eartips" [[https://cortechsolutions.com/product-category/stimulus-delivery/stimulus-delivery-auditory/stimulus-delivery-auditory-earphones/|cortech]] ((
 +Alternative from [[https://www.biosemi.nl/forum/viewtopic.php?f=7&t=1022&p=3097&hilit=headphones#p3097|biosemi forums]]: [[https://www.amazon.com/TDH39-Audiometer-Earphone-Transducers-Headsets/dp/B081DVNLRM|TDH39 DD45 Audiometer Earphone Air Transducers Headsets]] ($200) connected))
 +    * transducer/air: loudspeaker variable timing, frequency
 +    * normal headphones would interfere with signal
 +
 +===== Tasks =====
 +
 +As of 2025-10-09, [[:grants:habit:eeg]] and  [[:grants:spa:eeg]] tasks are
 +  * [[tools:antisaccade:eeg]] (Habit & SPA, psychopy) 
 +  * [[tools:vgs]] (Habit & SPA, psychopy)
 +  * [[:tools:habittask|Reward Learning and Habituation Task]] (Habit, browser with python shim)
 +  * [[:tools:auditorysteadystate]] (Habit, psychopy)
 +  * [[:tools:rest]] (Habit, EPrime)
 +  * [[:tools:switchtask]] ''nBMSI'' (SPA, psychopy)
 +===== Timing/TTL =====
 +
 +  * TTL sent over parallel port from presentation computer to control unit. see [[:tools:eeg_remark]]
 +
 +===== EEG Cap Layouts =====
 +==== Layouts ====
 +
 +
 +^Front                      ^ Back ^
 +|{{.:pasted:20260925-162110.png}}|{{.:pasted:20260925-162209.png}}      |
 +
 +^Habit/7T cap ^ SPA cap ^
 +|{{ :tools:habit_cap.png?direct&300 |}}| {{ :tools:spa_cap.png?direct&300 |}} |
 +
 +
 +
 +==== Habit ====
 +  * Standard BESA 64 channel layout
 +  * 6 extra channels added to cap from Pete Bachman (added as external channels and are removed from preprocessing pipeline)
 +  * Channels 65 and 66 are mastoids
 +  * use ''standard-10-5-cap385.elp'' <code=matlab>
 +eeglabpath = fileparts(which('eeglab'));
 +cap_location = fullfile(eeglabpath,'/plugins/dipfit/standard_BESA/standard-10-5-cap385.elp');
 +</code>
 +
 +==== 7T ====
 +
 +  * Standard BESA 64 channel layout (some have 128 channels)
 +  * 6 extra channels added to cap from Pete Bachman (added as external channels and are removed from preprocessing pipeline)
 +  * Channels 65 and 66 are mastoids
 +  * 64 channel layout: ''standard-10-5-cap385.elp'' <code=matlab>
 +eeglabpath = fileparts(which('eeglab'))
 +cap_location = fullfile(eeglabpath,'/plugins/dipfit/standard_BESA/standard-10-5-cap385.elp');
 +</code>
 +  * 128 channel layout: ''ChanLocMod128to64.ced'' <code=matlab>
 +correction_cap_location = hera('Projects/7TBrainMech/scripts/eeg/Shane/resources/ChanLocMod128to64.ced');</code>
 +
 +
 +==== SPA ====
 +
 +
 +  * Standard Biosemi 64 channel layout (different than Habit and 7T)
 +  * Locations can be found from Biosemi website: [[https://www.biosemi.com/headcap.htm]]
 +  * We did not get new channel labels so we are using the old channel labels from Habit/7T see MATLAB preprocessing code for fix
 +  * Currently only using 61/64 channels on new SPA cap (9/23/2026)
 +
 +
 +|Skipping cap ''FT7''                  |{{.:pasted:20260925-161720.png?x100}}|
 +|Channel ''FT8'' placed on cap ''FT10''|{{.:pasted:20260925-161800.png?x100}}|
 +
 +===== Notes from Cortech Solutions =====
 +
 +From Smith 2025-03-25 (correspondence with NR) with emphasis added
 +
 +> Unplugging, turning off, and turning back on cannot fix the CM out of range problem. Handling the cables may affect whether a partially broken cable works or does not. **When you perform a bucket test, it is important to <wrap tip>manipulate the cables, especially near the electrode end and the cable end</wrap>, to see if manipulating these weak areas reveals an intermittent fault.** Also, as time passes, gel may make its way from on top of the hair to the scalp at the critical CMS and DRL sites. Contact quality tends to improve with time as gel gets down to the scalp, but also as it wets the skin. With a participant who has very dry skin on the scalp, you might see a **flashing blue light simply because of insufficient contact quality at CMS and DRL**.
 +> When the blue light flashes with electrodes connected, <wrap tip>unplug everything but CMS/DRL at the AD box to see if the problem persists with only those electrodes</wrap>. If so, either CMS or DRL is broken or one or both lacks the quality of contact needed for the system to operate.
 +
 +
 +> If a faulty electrode is connected to the system but not touching the body, the blue CM in Range light could be on if everything else was connected well. I am actually not certain whether a faulty EXG electrode being connected to the system but not the body would cause the CM in Range light to flicker. But, when that **faulty electrode is connected to the body, it would cause the CM in Range light to flicker if it was already burning solid blue**. If the CM in Range light was not already burning solid blue, then there could be a different reason, namely whether CMS and DRL were well connected to the body..