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grants:spa:anatomical [2026/04/24 09:45] – vsydnorgrants:spa:anatomical [2026/04/24 09:46] (current) – [R1 PROCESSING PIPELINE] vsydnor
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 ===== R1 PROCESSING PIPELINE ===== ===== R1 PROCESSING PIPELINE =====
  
-Run ''Hera/Projects/SPA/scripts/mri/preproc/04_qT1_R1.bash'' to generate raw and UNICORT-corrected R1 maps from raw UNI data. The output is Hera/Projects/SPA/scripts/mri/R1/sub-$/ses-$/sub-$_ses-$_R1map.nii.gz+1. Run ''Hera/Projects/SPA/scripts/mri/preproc/04_qT1_R1.bash'' to generate raw and UNICORT-corrected R1 maps from raw UNI data. The output is Hera/Projects/SPA/scripts/mri/R1/sub-$/ses-$/sub-$_ses-$_R1map.nii.gz
   * This calls the script T1R1maps.m.This requires setting MP2RAGE parameters   * This calls the script T1R1maps.m.This requires setting MP2RAGE parameters
  - MP2RAGE.B0 = 7 . This is the # of Teslas  - MP2RAGE.B0 = 7 . This is the # of Teslas