Tutorials
General Links
- MIT's missing semester covers how to use “the command-line, use a powerful text editor, use fancy features of version control systems, and much more!”
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- especially AFNI's guide and Andy's brain blog book unix chapter
- R (also see R on this wiki)
- on writing comments in code https://noncombatant.org/2023/08/27/comments/ (also Code Documentation)
- FSL online course - FMRIB Software Library. alternative to AFNI,SPM
Amar's Curriculum
Schedule for pacing tutorials by week as provided to undergraduates by Amar
| Week | URL | What |
|---|---|---|
| 1 | https://www.learnshell.org/ | up to decision-making module |
| https://youtube.com/playlist?list=PLyGKBDfnk-iDVpUGSR_GlDmQrZOS0Lk6k | FMRI boot camp: lectures 1-3 | |
| 2 | https://statsthinking21.github.io/statsthinking21-core-site/index.html | Chapters 1-3 |
| 3 | https://statsthinking21.github.io/statsthinking21-core-site/index.html | chapter 4 |
| https://brandonhoenig.shinyapps.io/IntroToR/#section-introduction | intro to R tutorial | |
| https://brandonhoenig.shinyapps.io/GGplot2_Basics/#section-introduction | intro to data visualization in R using ggplot tutorial | |
| 4 | https://www.sharpsightlabs.com/blog/ggplot2-tutorial/ | ggplot2 tutorial |
| https://andysbrainbook.readthedocs.io/en/latest/unix/Unix_Intro.html | Unix for Neuroimagers: tutorials 1-3 (“What is Unix?” if needed) |
1)
suggested in Statistical Rethinking by Richard McElreath