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Version: brainstorm3 

Package is in Shane/resources/brainstorm3 

Need to add its path to matlab and then just run the command brainstorm 

Running/ installing brainstorm will automatically make a brainstorm_db folder in the same folder where brainstorm3 is saved (in my case resources)</description>
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        <title>️Tools And Methods - [Electroencephalogram (EEG)] </title>
        <link>https://lncd.pitt.edu/wiki/doku.php?id=tools&amp;rev=1794258444&amp;do=diff</link>
        <description>️Tools And Methods

also see “awesome-neuroimaging”

This (:tools) namespace includes what would be in the methods section of a paper. The companion :brain namespace includes what would be in the results section. see :brain vs :tools

Magnetic Resonance Imaging (MRI)

	*  Time-averaged T2* - nT2* of BOLD EPI (fMRI), an</description>
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        <dc:date>2026-11-09T19:54:22+00:00</dc:date>
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        <title>sEEG Data Collection &amp; Analysis</title>
        <link>https://lncd.pitt.edu/wiki/doku.php?id=tools:seeg&amp;rev=1794254062&amp;do=diff</link>
        <description>sEEG Data Collection &amp; Analysis

Data Collection

Physical Setup

	*  The task computer is connected to the sEEG computer via the USB hub
	*  The cart that has the sEEG computer gets plugged into the wall
	*  The power cord on the task computer cart gets plugged into the sEEG computer cart</description>
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        <dc:date>2026-11-06T16:55:23+00:00</dc:date>
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        <title>Habit sEEG Protocol</title>
        <link>https://lncd.pitt.edu/wiki/doku.php?id=grants:habit:seeg&amp;rev=1793984123&amp;do=diff</link>
        <description>Habit sEEG Protocol

PLEASE SEE &lt;https://lncd.pitt.edu/wiki/doku.php?id=tools:seeg&gt; for all info relating to sEEG

Documentation below for posterity only.

Administering

 TODO: MATLAB INSTRUCTIONS

Retrieving Data

Initially stored on Able&#039;s OneDrive. Data copied to Hera.


/Volumes/Hera/Raw/sEEG/</description>
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        <title>Loeffler building experiment rooms - [Behavior] </title>
        <link>https://lncd.pitt.edu/wiki/doku.php?id=tools:loeff_rooms&amp;rev=1793979817&amp;do=diff</link>
        <description>Loeffler building experiment rooms

This page describes the layout and hardware facilities used for experiments in the loeffler building.
 Room  purpose                                          130      131   /   132                        
Eye Tracking experiment room</description>
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        <title>Slips Task - [Data] </title>
        <link>https://lncd.pitt.edu/wiki/doku.php?id=tools:slipstask&amp;rev=1793979541&amp;do=diff</link>
        <description>Slips Task

“Slips of action” is a psiturk+javascript (behavior) and python+psychopy (MR pilot, unused) port of Simplified Fabulous Fruit Game, Sanne de Wit, 2019. It&#039;s served locally to be run from a web browser in the loeffler behavioral room. 
        link   active &lt;http://rhea.wpic.upmc.edu:22362&gt;</description>
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        <link>https://lncd.pitt.edu/wiki/doku.php?id=tools:neuromelanin&amp;rev=1793895716&amp;do=diff</link>
        <description>Neuromelanin

Acquisition



Datasets

	*  /eru/archive/luna/Phillips/mMR_PETDA/scripts/neuromelanin/WenglerCU/
	*  /Volumes/Hera/Projects/Habit/mr/neuromelanin

Analysis Code

	*  &lt;https://github.com/LabNeuroCogDevel/NM_toolbox&gt;
	*  /Volumes/Hera/Dan/MERIT_NM/nm_results.pdf (MERIT_NM/merit_NM_traj_analyses.Rmd</description>
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        <description>Dollar Reward

DollarReward/RingReward is rewarded and neutral Antisaccade Tasks task.

	*  was an EPrime task for Cog Grant (MR, behave) and later a Psychopy task for Habit Study (R37) (MR, EEG) and NCANDA (MR)
	*  Originally for ASL Eyetracker but adapted in psychopy for avotech and then Prisma SSR EyeLink
	*  Task source code is online and on bea_res</description>
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        <title>REDCap: New Instruments - [Adding surveys to RedCap manually] </title>
        <link>https://lncd.pitt.edu/wiki/doku.php?id=tools:redcap:importing&amp;rev=1792431370&amp;do=diff</link>
        <description>REDCap: New Instruments

Zip Upload/transfer

You can import existing survey instruments from other studies by downloading the zip. This allows transferring a redcap survey from one project to another.

This page outlines adding important a .zip instrument to an in-production</description>
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        <link>https://lncd.pitt.edu/wiki/doku.php?id=tools:redcap:logic&amp;rev=1792420133&amp;do=diff</link>
        <description>REDCap Survey Logic

REDCap logic 

**Survey Queue in Redcap!!! (˶ˆᗜˆ˵)**

On the lefthand side, click on Designer and go to Survey Queue setup. 



For this example, we are using MNBS that was added to SPA7T project in October 2026! 
Ensure that the measure is activated and ready for use. You can activate/deactivate clicking this button here.</description>
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Also see Software setup for researchers for a new computer software install check list

Homegrown

R, generic, and shell tools made specifically for our research

	*  LNCDR (date_match)
	*  lncdtools on wiki LNCD Tools (mkls for make, waitforjobs, dryrun and warn for Shell)

External

Here&#039;s a list of external software used for research. This is ideal reference for OAC Administered Systems. Also see</description>
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Log for EEG at Loeffler. Also see the dynamically generated log over full wiki Wiki Log

	*  2026-09-11 - Task PC&#039;s RA facing monitor “Benq XL2411” failed. replaced 9/15. One visit run at 1280×1024; reset to 1920×1080 for 9/15 and after. 
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