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    <image rdf:about="https://lncd.pitt.edu/wiki/lib/exe/fetch.php?media=wiki:dokuwiki.svg">
        <title>LNCD</title>
        <link>https://lncd.pitt.edu/wiki/</link>
        <url>https://lncd.pitt.edu/wiki/lib/exe/fetch.php?media=wiki:dokuwiki.svg</url>
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        <dc:format>text/html</dc:format>
        <dc:date>2026-09-29T16:31:23+00:00</dc:date>
        <dc:creator>will (will@undisclosed.example.com)</dc:creator>
        <title>LNCD Software - [LNCD Software] </title>
        <link>https://lncd.pitt.edu/wiki/doku.php?id=tools:software&amp;rev=1790699483&amp;do=diff</link>
        <description>LNCD Software

Also see Software setup for researchers for a new computer software install check list

Homegrown

R, generic, and shell tools made specifically for our research

	*  LNCDR (date_match)
	*  lncdtools on wiki LNCD Tools (mkls for make, waitforjobs, dryrun and warn for Shell)

External

Here&#039;s a list of external software used for research. This is ideal reference for OAC Administered Systems. Also see</description>
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        <dc:format>text/html</dc:format>
        <dc:date>2026-09-25T20:28:30+00:00</dc:date>
        <dc:creator>will (will@undisclosed.example.com)</dc:creator>
        <title>Loeffler EEG Log</title>
        <link>https://lncd.pitt.edu/wiki/doku.php?id=tools:loefeeg:log&amp;rev=1790368110&amp;do=diff</link>
        <description>Loeffler EEG Log

Log for EEG at Loeffler. Also see the dynamically generated log over full wiki Wiki Log

	*  2026-09-11 - Task PC&#039;s RA facing monitor “Benq XL2411” failed. replaced 9/15. One visit run at 1280×1024; reset to 1920×1080 for 9/15 and after. 
	*  2026-08-19 Record PC</description>
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        <title>EEG at Loeffler</title>
        <link>https://lncd.pitt.edu/wiki/doku.php?id=tools:loefeeg&amp;rev=1790368022&amp;do=diff</link>
        <description>EEG at Loeffler

The current first-floor Loeffler building EEG collection first started in March-May 2022. And is used for Habit EEG Protocol (and maybe eventually SPA EEG). 7T EEG had some but not all data collected here. Both Habit and 7T data are stored in /Volumes/Hera/Raw/EEG/</description>
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        <dc:creator>will (will@undisclosed.example.com)</dc:creator>
        <title>Loeffler EEG Task PC - [Audio] </title>
        <link>https://lncd.pitt.edu/wiki/doku.php?id=tools:loefeeg:eegtaskpc&amp;rev=1790367112&amp;do=diff</link>
        <description>Loeffler EEG Task PC

Linux PC for running tasks, part of EEG at Loeffler.

2025-10-27 After Win10 PC USB failures, replaced PC with new hardware running Debian Linux. (Loeffler EEG Log)

Audio

Psychopy 2025 has mutli-audio issues?


pip show psychopy|grep Version # Version: 2025.2.1
python3 ~/.venv/lib/python3.13/site-packages/psychopy/demos/coder/stimuli/soundStimuli.py
# 
Expression &#039;ret&#039; failed in &#039;src/hostapi/alsa/pa_linux_alsa.c&#039;, line: 1742
Expression &#039;AlsaOpen( hostApi, parameters, stre…</description>
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        <title>Switch Task (MMY4, SPA) - [Switch Task (MMY4, SPA)] </title>
        <link>https://lncd.pitt.edu/wiki/doku.php?id=tools:switchtask&amp;rev=1790364618&amp;do=diff</link>
        <description>Switch Task (MMY4, SPA)

Also known as  nBMSI  n-Back Multi-Source Interference. Original used MMY4 but with 3rd n-back trial type.

Code shared publicly at &lt;https://github.com/labneurocogdevel/MMY4&gt; written in matlab with Psychtoolbox and adapted for EEG with Psychopy/python

Bart&#039;s 2016 WPIC poster on the task: [Brain state expression and cognitive flexibility in adolescence and young-adulthood]

MR

See</description>
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        <title>habit_cap.png</title>
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        <title>Habit Dollar Reward fMRI processing</title>
        <link>https://lncd.pitt.edu/wiki/doku.php?id=grants:habit:mr:dollarreward&amp;rev=1790090951&amp;do=diff</link>
        <description>Habit Dollar Reward fMRI processing

Habit Study (R37) preprocesing of Habit MR&#039;s Dollar Reward

Small Overview:

	*  preprocessing with fmriprep
	*  additional cleaning (smoothing, nuisance compute mhproc fMRI Preprocessing)
	*  first level GLM


cd /Volumes/Hera/Projects/Habit/mr
ls fmriprep/25.0.0*/sub-*/ses-*/func/sub-*_ses-*_task-dollarreward_run-1_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz</description>
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        <title>**Geocoding! **</title>
        <link>https://lncd.pitt.edu/wiki/doku.php?id=tools:geocode&amp;rev=1790088948&amp;do=diff</link>
        <description>**Geocoding! **

In R, you can use package/library tidygeocoder to convert participant addresses to latitude and longitude coordinates.

Example code:


### CONVERT PARTICIPANT ADDRESSES TO LATITUDES AND LONGITUDES (tidygeocoder) ### 
SPA7T.child.addresses &lt;- SPA7T_child %&gt;% geocode(address = full.address, method = &quot;census&quot;, mode = &quot;single&quot;, verbose = TRUE, full_results = TRUE)</description>
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        <dc:format>text/html</dc:format>
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        <dc:creator>martineza10 (martineza10@undisclosed.example.com)</dc:creator>
        <title>Behavioral Indicator of Resiliency to Distress (BIRD) - [7T] </title>
        <link>https://lncd.pitt.edu/wiki/doku.php?id=tools:bird&amp;rev=1790087302&amp;do=diff</link>
        <description>Behavioral Indicator of Resiliency to Distress (BIRD)

7T

7T Behavioral Protocol /Volumes/Hera/Projects/7TBrainMech/scripts/behave/BIRD_110122.RData

𓅰 𓅬 𓅭 𓅮 𓅯 𓅰 𓅬 𓅭 𓅮 𓅯 𓅰 𓅬 𓅭 𓅮 𓅯 𓅰 𓅬 𓅭 𓅮 𓅯 𓅰 𓅬 𓅭 𓅮 𓅯 𓅰 𓅬 𓅭 𓅮 𓅯 𓅰 𓅬 𓅭 𓅮 𓅯 𓅰 𓅬 𓅭 𓅮 𓅯</description>
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        <dc:date>2026-09-04T15:54:02+00:00</dc:date>
        <dc:creator>will (will@undisclosed.example.com)</dc:creator>
        <title>Infrastructure Citations - [Infrastructure Citations] </title>
        <link>https://lncd.pitt.edu/wiki/doku.php?id=tools:infrastructure_cite&amp;rev=1788537242&amp;do=diff</link>
        <description>Infrastructure Citations

For what project is using what resource, see Infrastructure Resources to cite by project. For grant writing, see Grant Blurbs.
This outlines infrastructure not funding resources (Funding Resources).

MRRC

rrid:scr_025215

	&quot; 2. Please cite the MRRC in your publications. Research Resource Identifiers (RRIDs) are persistent and unique identifiers for research resources such as core facilities, organisms, tools, etc. More information can be found on this website:</description>
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        <dc:creator>will (will@undisclosed.example.com)</dc:creator>
        <title>Grants - [Grants] </title>
        <link>https://lncd.pitt.edu/wiki/doku.php?id=grants&amp;rev=1788537186&amp;do=diff</link>
        <description>Grants

Available Datasets enumerates projects for all grants, also see Current Projects in the Lab and Funding Resources. Resource usage is annotated on Infrastructure Resources to cite by project

Resources

	*  Grant Blurbs - Equipment, facilities, etc 
	*  Funding Resources - grants to apply for
	*  Grants Template - Wiki page template for new grants

Existing Studies

See IRB Approvals for grant numbers and documentation organization of existing grants.</description>
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