EEG Coordinates

Open MATLAB, run brainstorm
Use default anatomy ICBM 152
File > new subject > use default anatomy
Import EEG
- Can select all data or just one trigger type
Right click on subject > Review raw file > Imports raw data
Right click on channels > MRI registration > Refine using head points
Right click on channels > MRI registration > Edit
Project labels to surface
Refine registration to head points
Ok
Yes
Right click on channels > Edit channel file
- Allows you to se the channel loc coordinates
Right click on channels > File > Export to matlab
Go to convertCoor.m
- Change the 'Type' in the EEG struct from 'EEG' to 'ECOG'
Go back to Brainstorm
Right click on channels > File > Import from matlab > select struct with 'ECOG' type
Right click on channels > MRI registration ? Edit … (cortex)
Project electrodes on surface
Ok
Yes
Right click on channels > File > Export to matlab
Go to anatomy page in brainstorm > Right click on MRI: ICBM152 > File > Export to Matlab
In matlab run loop to get x y z loc data array
Run cs_convert to transpose those coordinates to MNI (*1000 to put into correct units)
Save out as table
Open terminal
ssh -Y r
cd to directory with bash script
vim EEGcoordinatesAtlas.bash if you need to edit the script
Click 'a' to insert
esc to exit insert mode
Type ':wq' to write and quit
bash EEGcoordinatesAtlas.bash to run