https://www.templateflow.org/ is a repository of neuroimaging templates (eg. MNI) and a python library to pragmatically download them.
You can find these on rhea:/opt/ni_tools/templateflow/
TEMPLATEFLOW_HOME
is set to /opt/ni_tools/templateflow/
~/.cache/templateflow
can be a symbolic link to /opt/ni_tools/templateflow/
$TEMPLATEFLOW_HOME
to that used in the container -v /opt/ni_tools/templateflow/:/root/.cache/templateflow
. This will avoid downloading large files every time the container is runls /opt/ni_tools/templateflow
tpl-dhcpAsym tpl-MNI152NLin2009bSym tpl-NKI tpl-dhcpSym tpl-MNI152NLin2009cAsym tpl-NMT31Sym tpl-dhcpVol tpl-MNI152NLin2009cSym tpl-OASIS30ANTs tpl-Fischer344 tpl-MNI152NLin6Asym tpl-onavg tpl-fsaverage tpl-MNI152NLin6Sym tpl-PNC tpl-fsLR tpl-MNI305 tpl-RESILIENT tpl-MNI152Lin tpl-MNIColin27 tpl-UNCInfant tpl-MNI152NLin2009aAsym tpl-MNIInfant tpl-VALiDATe29 tpl-MNI152NLin2009aSym tpl-MNIPediatricAsym tpl-WHS tpl-MNI152NLin2009bAsym tpl-MouseIn