CSpine

• On github https://github.com/LabNeuroCogDevel/cspine-pointer
• On rhea /Volumes/Hera/Projects/cspine-pointer
  • Default outputs stored in /Volumes/Hera/Projects/cspine-pointer/output with file names defaulting to mirroring input like

sub-11275_ses-20160519_acq-1ADNIG2_run-2_T1w_cspine-lncd_create-2024-10-31T154517.tsv

• /Volumes/Hera/scratch/cspine is linked to the above directory

• all placements are also recorded in a sqlite3 database /Volumes/Hera/Projects/cspine-pointer/cspine.db regardless of if they are saved to an output tsv file.

In the PET Study, the neck coil was on for adult (radiotracer receiving) participants during a mprage acquisition. This incidentally images the spine.

selld8  list|
   awk '(/Scan.*PET/ && $2>18){print $1}'|
   sed 's/^/sub-/;s:_:/ses-:' |
   xargs -I{} find /Volumes/Hera/Raw/BIDS/mMRDA-dev/{}/anat/ -iname '*T1w.nii.gz' |
   tee /Volumes/Hera/Projects/cspine-pointer/PET_filelist.txt