Interest in Thalamus from Sarpal, via FC:
NAAG is meant to modulate glutamatergic activity, so quetion was whether this predicts thalamic functional connectivity
running a seeded Functional Connectivity analysis on the thalamus and regressing voxelwise values vs NAAG seemed like a relatively easy thing to check
For freesurfer segmentation, see segmentThalamicNuclei.sh.
In 7T Magnetic Resonance Imaging, /Volumes/Hera/Projects/7TBrainMech/scripts/mri/FS/020_segThal.bash has
# run thalmus segmentation with FS7.2 # 20230313 ... for OR STATS=thalamic-nuclei.rh.v12.T1.stats SCRIPT=segmentThalamicNuclei.sh
As of 2025-09-09, 275 have ThalamicNuclei.v12.T1.mgz segmentation output files.
ls /Volumes/Hera/preproc/7TBrainMech_rest/FS7.2/highres/1*_2*/mri/ThalamicNuclei.v12.T1.mgz|wc -l 275