====== Tutorials ======
===== General Links =====

  * [[https://missing.csail.mit.edu/2020/|MIT's missing semester]] covers how to use "the command-line, use a powerful text editor, use fancy features of version control systems, and much more!"
  * The [[tools:shell]] page's [[tools:shell#tutorials]] section provides links for linux and the command line shell.
    * especially [[https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/background_install/unix_tutorial/basic/basic_03.scripts.html|AFNI's guide]] and [[https://andysbrainbook.readthedocs.io/en/latest/unix/Unix_Intro.html|Andy's brain blog book unix chapter]] 
  * [[http://cran.r-project.org/|R]] (also see [[tools:r|R on this wiki]]) 
    * [[https://cran.r-project.org/doc/contrib/Paradis-rdebuts_en.pdf|Emmanuel Paradis’ R for Beginners]] ((suggested in //Statistical Rethinking// by Richard McElreath))
    * [[https://github.com/matloff/TidyverseSkeptic|R in a Kinder, Gentler, More Effective Manner (base not tidyverse)]]
    * [[https://happygitwithr.com/rstudio-git-github.html|happy git with R]]
    * http://cran.r-project.org/other-docs.html
  * on writing comments in code https://noncombatant.org/2023/08/27/comments/ (also [[::admin:codedocumentation]])
  * [[https://open.win.ox.ac.uk/pages/fslcourse/website/online_materials.html#unix|FSL online course]] - FMRIB Software Library. alternative to AFNI,SPM
 


===== Amar's Curriculum =====

Schedule for pacing tutorials by week as provided to undergraduates by [[:notebooks:Amar]]

^ Week ^ URL ^What ^
| 1| https://www.learnshell.org/| up to decision-making module |
| |https://youtube.com/playlist?list=PLyGKBDfnk-iDVpUGSR_GlDmQrZOS0Lk6k| FMRI boot camp: lectures 1-3|
|2| https://statsthinking21.github.io/statsthinking21-core-site/index.html| Chapters 1-3|
| 3| https://statsthinking21.github.io/statsthinking21-core-site/index.html| chapter 4|
|       | https://brandonhoenig.shinyapps.io/IntroToR/#section-introduction| intro to R tutorial |
|       |https://brandonhoenig.shinyapps.io/GGplot2_Basics/#section-introduction| intro to data visualization in R using ggplot tutorial|
| 4| https://www.sharpsightlabs.com/blog/ggplot2-tutorial/| ggplot2 tutorial|
|      |https://andysbrainbook.readthedocs.io/en/latest/unix/Unix_Intro.html|Unix for Neuroimagers: tutorials 1-3 ("What is Unix?" if needed) |