====== EEG Coordinates ======

  * Open MATLAB, run brainstorm 
  * Use default anatomy ICBM 152
  * File > new subject > use default anatomy 
  * Import EEG
    * Can select all data or just one trigger type
  * Right click on subject > Review raw file > Imports raw data 
  * Right click on channels > MRI registration > Refine using head points 
  * Right click on channels > MRI registration > Edit
  * Project labels to surface
  * Refine registration to head points 
  * Ok
  * Yes
  * Right click on channels > Edit channel file
    * Allows you to se the channel loc coordinates 
  * Right click on channels > File > Export to matlab 
  * Go to convertCoor.m
    * Change the 'Type' in the EEG struct from 'EEG' to 'ECOG'
  * Go back to Brainstorm
  * Right click on channels > File > Import from matlab > select struct with 'ECOG' type 
  * Right click on channels > MRI registration ? Edit ... (cortex)
  * Project electrodes on surface
  * Ok
  * Yes
  * Right click on channels > File > Export to matlab
  * Go to anatomy page in brainstorm > Right click on MRI: ICBM152 > File > Export to Matlab 
  * In matlab run loop to get x y z loc data array 
  * Run cs_convert to transpose those coordinates to MNI (*1000 to put into correct units)
  * Save out as table
  * Open terminal 
  * ssh -Y r
  * cd to directory with bash script
  * vim EEGcoordinatesAtlas.bash if you need to edit the script
  * Click 'a' to insert 
  * esc to exit insert mode
  * Type ':wq' to write and quit 
  * bash EEGcoordinatesAtlas.bash to run