====== Schaefer Atlas ======


===== Volumetric =====

See 
[[https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/MNI|Yeo Lab Schaefer MNI @ github]] and on rhea ''/opt/ni_tools/atlas/schaefer2018/'' (1000Parcels to 200Parcels for both 17 and 7 Network variations)




<code>
3dresample \
  -inset /opt/ni_tools/atlas/schaefer2018/Schaefer2018_LocalGlobal/Parcellations/MNI/Schaefer2018_1000Parcels_17Networks_order_FSLMNI152_1mm.nii.gz \
  -master $MY_FUNC_EXAMPLE \
  -rmode NN \
  -output schaefer-N17P1000_res-func.nii.gz
</code>


Plotting regional statistics in Schaefer atlases is easy in R with [[https://github.com/ggseg/ggsegSchaefer | ggsegSchaefer]]