====== fMRI Preprocessing ======
This page is a generic overview. For specific software see
  * [[:tools:fmriprep]] + [[:tools:xcpd]] -- BIDS App standard functional MRI preprocessing
  * [[tools:preprocessfunctional]] -- in-house legacy pipeline from Hallquist. Has useful features and exists for older studies ([[:grants:cog]], [[:grants:pet]], [[grants:7t]])


Considerations:
  * Warping/output space: across participants ''MNI''; per-session (''bold'' or ''anat'')
  * scope of signal cleaning: minimal (fmriprep, ABCD), maximal (xcpd, hallquist)