====== CSpine ======

  * On github https://github.com/LabNeuroCogDevel/cspine-pointer
  * On rhea ''/Volumes/Hera/Projects/cspine-pointer''
    * Default outputs stored in ''/Volumes/Hera/Projects/cspine-pointer/output'' with file names defaulting to mirroring input like 
<code>sub-11275_ses-20160519_acq-1ADNIG2_run-2_T1w_cspine-lncd_create-2024-10-31T154517.tsv</code>
    * ''/Volumes/Hera/scratch/cspine'' is linked to the above directory

  * all placements are also recorded in a sqlite3 database ''/Volumes/Hera/Projects/cspine-pointer/cspine.db'' regardless of if they are saved to an output ''tsv'' file.

===== PET data =====
In the [[:grants:pet]], the neck coil was on for adult (radiotracer receiving) participants during a mprage acquisition. This incidentally images the spine. 
<code>
selld8  list|
   awk '(/Scan.*PET/ && $2>18){print $1}'|
   sed 's/^/sub-/;s:_:/ses-:' |
   xargs -I{} find /Volumes/Hera/Raw/BIDS/mMRDA-dev/{}/anat/ -iname '*T1w.nii.gz' |
   tee /Volumes/Hera/Projects/cspine-pointer/PET_filelist.txt
</code>