====== Cog Grant ======

Scanned with 3T on southside (BIRC -> NIC) before it was shut down (c. 2019).

===== Tasks =====

==== MR ====
Functional MRI tasks include 4 runs of [[:tools:antisaccade]] block design (breaks maybe background [[:tools:rest]]) and 3 runs of [[:tools:mgs]]. There is also a [[:tool:dwi]] and structural scan.

<code>
for d in /Volumes/Hera/Raw/MRprojects/CogLong/150411090938/*; do 
  find $d -type f -iname '*dcm' -exec\
   dicom_hinfo \
       -sepstr \| -no_name -full_entry \
       -tag 0018,1030 -tag 0018,0080 -tag 0018,1310 {} \; \
       -quit
   done | sed 's/^\|$/|/g'
</code>

^acq name ^ TR ^ Acq Mat ^
|circle_localizer|20| 0 256 256 0|
|trufi_sag |5.43| 0 256 256 0|
|t2_tse_tra|4790| 0 256 256 0|
|t1_mprage_sag_ns_tilt |1630| 0 256 256 0|
|ep2d_diff_mddw6 |3900| 128 0 0 128|
|ep2d_bold_9VGSANTI|1500| 64 0 0 64|
|ep2d_bold_9VGSANTI|1500| 64 0 0 64|
|ep2d_bold_9VGSANTI|1500| 64 0 0 64|
|ep2d_bold_9VGSANTI|1500| 64 0 0 64|
|ep2d_bold_MGS |1500| 64 0 0 64|
|ep2d_bold_MGS |1500| 64 0 0 64|
|ep2d_bold_MGS |1500| 64 0 0 64|
|t1_mprage_sag_ns_tilt |1630| 0 256 256 0|


==== Behavioral ====

Tasks recorded in the original MS Access Database (exported to postgresql).
We have responses for [[:tools:wasi]] (IQ), [[:tools:Puberty]] ([[:tools:tanner]]), and [[:tools:stroop]] among others.

<code>
lncddb "
  select task,
         count(*) cnt,
         to_char(min(vtimestamp),'YYYY-MM-DD') first,
         to_char(max(vtimestamp),'YYYY-MM-DD') last
  from visit_task natural
  join visit_study natural join visit
  where study like 'Cog%'
  group by task
  having count(*) > 10
  order by cnt desc;" | sed 's/^\|$\|\t/|/g'
</code>
^task^ cnt ^first^last^
|Demographics|880|2000-01-01|2019-05-11|
|PaperStroop|845|2004-01-19|2019-05-11|
|PrePostBehavioral|837|2005-05-12|2019-05-11|
|CANTABQuestionnaire|831|2005-05-12|2019-05-11|
|SensationSeeking|680|2006-01-25|2019-05-11|
|PrePostScan|624|2005-07-05|2019-06-08|
|Puberty|581|2005-03-10|2018-01-26|
|WASI|553|2000-01-01|2018-08-25|
|Handedness|477|2000-01-01|2018-01-26|
|CBCL|12|2006-08-24|2010-08-11|
|EpilepsyQuestionnaire|11|2006-08-24|2008-12-03|
|BRIEF|11|2006-08-24|2008-12-03|
|CDI|11|2006-08-24|2008-12-03|
|SCARED|11|2006-08-24|2008-12-03| 


=== Sensation Seeking ===

<code>
select measures::json 
 from visit_task 
 natural join visit_study
 where study like 'Cog%' and
       task like 'SensationSeeking%'
 limit 3;
 
                                   measures                                    
--------------------------------------------------------------------------------
 {"Notes": "", "sssBS": 1, "sssES": 2, "sssDIS": 1, "sssTAS": 6, "sssTOT": 10}
 {"Notes": "", "sssBS": 3, "sssES": 3, "sssDIS": 4, "sssTAS": 4, "sssTOT": 14}
 {"Notes": "", "sssBS": 1, "sssES": 6, "sssDIS": 4, "sssTAS": 10, "sssTOT": 21}

</code>

=== Puberty ===

<code>
select measures::json from visit_task natural join visit_study where study like 'Cog%' and task like 'Puberty%' limit 1;


 {"tsr": 3.5, "Notes": "", "Fpubic": null, "Mpubic": null, "pps1to5": 2.8, "Mgenital": null, "Tanner3m": null, "heightft": 5, "heightin": 2, "pps3skin": 3, "pps6devt": 4, "weightlbs": 90, "FppsMenstr": -1, "Mpps4voice": null, "pps1growth": 2, "Fage.Breast": null, "Fpps4breast": 2, "Tanner1hair": 4, "pubcomplete": 0, "agepubcompMO": null, "pps2bodyhair": 3, "Mpps5hairface": null, "agepubcompYRS": null, "FppsMenstrAgeMO": 10, "FppsMenstrAgeYR": 13, "Fage.Menstration": null, "Tanner2TSP.orBreast": 3}
</code>